calibrate_od.RdUsed by process_plate function for optical density calibration. Function
adds calibrated_OD column to the data, which is returned. Originally based on
flopr::calibrate_od, except instr argument added to allow selection of
conversion factor from table that may include multiple instruments, and
includes error checks that report to the user if conversion factors are
missing.
calibrate_od(pr_data, od_name, instr, conversion_factors_csv)
| pr_data | a dataframe of parsed plate reader data |
|---|---|
| od_name | the column name for the optical density data |
| instr | character string to represent instrument. If do_calibrate = TRUE, used for filtering od_coeffs_csv and fluor_coeffs_csv files for conversion factors of the relevant instrument. |
| conversion_factors_csv | path of the csv file containing conversion factors for optical density |